RnoEX0073410 @ rn6
Exon Skipping
Gene
ENSRNOG00000002736 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:RGD Symbol;Acc:1304620]
Coordinates
chr13:78520025-78608844:-
Coord C1 exon
chr13:78608793-78608844
Coord A exon
chr13:78521730-78521909
Coord C2 exon
chr13:78520025-78520217
Length
180 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTGTACTCTCTTTAGCTG
3' ss Score
8.2
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GACTCGGGCGTCTGACAGAGTTGTTGTTCCGGCACGGCCGCGGAGACGTGAG
Seq A exon
CTGTGCCAGGTGGATGTGGGCAGAGAGGTTTGCAGGGCTGAAATGGAGGTCAGAGCTTCCTTACAGAAGGTCAGTGGGTCACCTGATTCTGCGGCCACACTGAACAGTGAAGAGTTTGTTTTGGTTCCTCAGCACACAGATGACACTTCTATAAAGGATGATGGGAAGCCACAGCTGAAG
Seq C2 exon
ATAGCTTCCAATGGTGATGAGCAGTTGGAAAAAGCCATGGAAGAGATTTTGAGAGATTCCGAGAAAGGGCAAAGCAGTCTACCTGTTGATGGCCAAGGATCCAGTGAGATTTCAGACCATTCCTTTGGAGATGTTCCAGCCAGCCAATCAAATAAACCACCTCTCCAGTTAATTTTGGATCCATCTAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002736-'0-7,'0-4,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.978 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCGGGCGTCTGACAGA
R:
TGGATCCAAAATTAACTGGAGAGGT
Band lengths:
235-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]