BtaEX6069869 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027809 | RABGAP1L
Description
Bos taurus RAB GTPase activating protein 1-like (RABGAP1L), mRNA. [Source:RefSeq mRNA;Acc:NM_001103263]
Coordinates
chr16:56941660-57018298:+
Coord C1 exon
chr16:56941660-56941733
Coord A exon
chr16:57015969-57016139
Coord C2 exon
chr16:57018106-57018298
Length
171 bp
Sequences
Splice sites
3' ss Seq
ATCTTTGTGGTTTTGACCAGGTG
3' ss Score
8.8
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
AGAACGCTGGGCGGCGGGTGCGACGCGGGCGCCTGGCAGAGTTGTTCCGGCCCTTCCCGCGGAGACGAGAGGAG
Seq A exon
GTGGATGTGGAAAGAGAAGTTTGCAGAACTGAAATGGAGGTCAGAGCTTCATTACAGAAGGTTAGTGGGTCATCGGATTCTGTGACTACACTCAACAGTGAAGAATTTGTTTTGGTTCCTCAGCATGGAGGTGATACTTCTACAAAAGATGATGAAAAACCTGAACTGAAG
Seq C2 exon
ATAGTTTCTAATGGTGATGAACAACTGGAAAAAGCCATGGAAGAGATTTTGAGAGATTCGGAGAAGGGGCAAAGCAGCCTTCCTGTTGATTGTCCAAGTTCCAGTGAGATTTCAGACCATTCATTTGGAAATATTTCAGCCAGGCAAACAAATAAGCCATCTCTTCAGTTAATTTTGGATCCATCAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027809-'0-3,'0-1,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.957 C2=0.923
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTGGCAGAGTTGTTCC
R:
GATCCAAAATTAACTGAAGAGATGGC
Band lengths:
226-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]