MmuEX0038442 @ mm10
Exon Skipping
Gene
ENSMUSG00000026721 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:MGI Symbol;Acc:MGI:1352507]
Coordinates
chr1:160740752-160792946:-
Coord C1 exon
chr1:160792736-160792946
Coord A exon
chr1:160740863-160740931
Coord C2 exon
chr1:160740752-160740799
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTGTTACTCTTTAGTTG
3' ss Score
8.1
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
TCCTCCTCAGTCCGCCCCCTCCCTCGCCTCTTCCTGCCGTGCGGTCCTCTCCCCTCCCCAGCCCGCTCCCTCCGCCCCGTTCCCTCCGCCCTCCCTGGGCTTCGGCCGCGGCGGAGTGAACGGGACGGGCCCGGCCGCAGAGCTCTGGGCGGCGGGTGGGACTCGGGCGTCTGACAGAGTTGTTGTTCCGGCACGGCCGCGGAGACGTGAG
Seq A exon
TTGTTCCAGGTGGATGTGGGCAGAGAGGTTTGCAGAACTGAAATGGAGGTCAGAGCTTCGTTCCAGAAG
Seq C2 exon
CACACAGATGCCACTTCTATAAAGGATGATGGGAAGCCACAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026721_MULTIEX2-1/3=C1-2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.654 C2=0.697
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCTCCCCTCCCCAGC
R:
CTTTATAGAAGTGGCATCTGTGTG
Band lengths:
191-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types