MmuEX0038442 @ mm9
Exon Skipping
Gene
ENSMUSG00000026721 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:MGI Symbol;Acc:MGI:1352507]
Coordinates
chr1:162670883-162723069:-
Coord C1 exon
chr1:162722867-162723069
Coord A exon
chr1:162671015-162671062
Coord C2 exon
chr1:162670883-162670930
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTGTTACTCTTTAGTTG
3' ss Score
8.1
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
AGTCCGCCCCCTCCCTCGCCTCTTCCTGCCGTGCGGTCCTCTCCCCTCCCCAGCCCGCTCCCTCCGCCCCGTTCCCTCCGCCCTCCCTGGGCTTCGGCCGCGGCGGAGTGAACGGGACGGGCCCGGCCGCAGAGCTCTGGGCGGCGGGTGGGACTCGGGCGTCTGACAGAGTTGTTGTTCCGGCACGGCCGCGGAGACGTGAG
Seq A exon
TTGTTCCAGGTGGATGTGGGCAGAGAGGTTTGCAGAACTGAAATGGAG
Seq C2 exon
CACACAGATGCCACTTCTATAAAGGATGATGGGAAGCCACAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026721_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.673 C2=0.771
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGGCGTCTGACAGAGTT
R:
CTGTGGCTTCCCATCATCCTT
Band lengths:
92-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: