MmuALTD0011589-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000004952 | Rasa4
Description
RAS p21 protein activator 4 [Source:MGI Symbol;Acc:MGI:1858600]
Coordinates
chr5:136577114-136577559:+
Coord C1 exon
chr5:136577114-136577264
Coord A exon
chr5:136577265-136577290
Coord C2 exon
chr5:136577495-136577559
Length
26 bp
Sequences
Splice sites
5' ss Seq
CAGGCAGGG
5' ss Score
1.71
3' ss Seq
ACTAGAATTTCTGCTTGCAGGTG
3' ss Score
7.42
Exon sequences
Seq C1 exon
GGCCCAGGACGGCTGATTCCTGTCATTGAGGAGACAACTAGTGCCGAGTGTCGCCAGGAAGTGGCCACCACCCTGCTCAAACTCTTCCTGGGGCAGGGGCTGGCCAAGGACTTTCTGGATCTGCTTTTTCAGCTGGAGCTGGGCCGCACCA
Seq A exon
GTGAGGCCTGAGAGGACTTGTCCCAG
Seq C2 exon
GTGAAGCCAACACCCTCTTCCGGAGCAATTCTCTGGCCTCAAAGTCCATGGAGTCTTTCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004952-16-15,17-15-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PU(6.8=25.5)
A:
NA
C2:
PF0061614=RasGAP=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCTGCTCAAACTCTTCC
R:
GAATTGCTCCGGAAGAGGGTG
Band lengths:
115-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: