MmuALTD0012284-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000050896 | Rtn4rl2
Description
reticulon 4 receptor-like 2 [Source:MGI Symbol;Acc:MGI:2669796]
Coordinates
chr2:84880388-84886476:-
Coord C1 exon
chr2:84886274-84886476
Coord A exon
NA
Coord C2 exon
chr2:84880388-84880869
Length
0 bp
Sequences
Splice sites
5' ss Seq
CATGTGGGT
5' ss Score
2.93
3' ss Seq
TCACTATGCTCTCCCCACAGGTC
3' ss Score
13.39
Exon sequences
Seq C1 exon
GCGGGGAGCTCGTGACCAAGGGGGGACGCGGAGGGCAGACCGAGCTGGCTGGGAGGAGGAGAAAGAGGCTCAGGTTCTGTTGTCCCGGCTCCACCTGCTCCGGGGGGACGCTGAGGACTCGGGCCGGCTGGGGAAGCGCCGACTCAGCAACTCCTCGTGCCCGGTGTCTCAGCACTTTCCAGTCACCTGGGAAGACAAGCCAT
Seq A exon
NA
Seq C2 exon
GTCCTGCCTCAGCCTGCCTACTGCTGACACTCCTGGCCCTTCCTTCCGTGACCCCCAGCTGTCCTATGCTCTGCACCTGCTACTCCTCCCCGCCCACCGTGAGCTGCCAGGCCAACAACTTCTCCTCAGTGCCGCTGTCCTTGCCACCCAGTACACAGAGACTCTTCTTGCAGAACAACCTCATCCGCTCACTGCGGCCAGGCACCTTTGGGCCCAACCTGCTCACCCTGTGGCTCTTCTCCAACAACCTCTCCACCATCCACCCTGGCACCTTCCGCCACCTGCAGGCCCTAGAAGAACTGGACCTCGGTGACAACCGGCACCTGCGCTCCCTGGAGCCCGACACCTTCCAGGGTCTGGAGAGGCTGCAGTCACTACACCTGTATCGTTGCCAGCTCAGCAGCCTGCCTGGCAACATTTTCCGAGGCTTGGTCAGCCTACAGTACCTCTACCTCCAGGAGAACAGCCTGCTCCATCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050896-1-2,2-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138551=LRR_8=WD(100=37.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCACCTGGGAAGACAAGC
R:
GTGCAGAGCATAGGACAGCTG
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types