MmuALTD0012284-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000050896 | Rtn4rl2
Description
reticulon 4 receptor-like 2 [Source:MGI Symbol;Acc:MGI:2669796]
Coordinates
chr2:84720545-84726633:-
Coord C1 exon
chr2:84726431-84726633
Coord A exon
NA
Coord C2 exon
chr2:84720545-84721026
Length
0 bp
Sequences
Splice sites
5' ss Seq
CATGTGGGT
5' ss Score
2.93
3' ss Seq
TCACTATGCTCTCCCCACAGGTC
3' ss Score
13.39
Exon sequences
Seq C1 exon
GCGGGGAGCTCGTGACCAAGGGGGGACGCGGAGGGCAGACCGAGCTGGCTGGGAGGAGGAGAAAGAGGCTCAGGTTCTGTTGTCCCGGCTCCACCTGCTCCGGGGGGACGCTGAGGACTCGGGCCGGCTGGGGAAGCGCCGACTCAGCAACTCCTCGTGCCCGGTGTCTCAGCACTTTCCAGTCACCTGGGAAGACAAGCCAT
Seq A exon
NA
Seq C2 exon
GTCCTGCCTCAGCCTGCCTACTGCTGACACTCCTGGCCCTTCCTTCCGTGACCCCCAGCTGTCCTATGCTCTGCACCTGCTACTCCTCCCCGCCCACCGTGAGCTGCCAGGCCAACAACTTCTCCTCAGTGCCGCTGTCCTTGCCACCCAGTACACAGAGACTCTTCTTGCAGAACAACCTCATCCGCTCACTGCGGCCAGGCACCTTTGGGCCCAACCTGCTCACCCTGTGGCTCTTCTCCAACAACCTCTCCACCATCCACCCTGGCACCTTCCGCCACCTGCAGGCCCTAGAAGAACTGGACCTCGGTGACAACCGGCACCTGCGCTCCCTGGAGCCCGACACCTTCCAGGGTCTGGAGAGGCTGCAGTCACTACACCTGTATCGTTGCCAGCTCAGCAGCCTGCCTGGCAACATTTTCCGAGGCTTGGTCAGCCTACAGTACCTCTACCTCCAGGAGAACAGCCTGCTCCATCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050896-1-1,2-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138551=LRR_8=WD(100=37.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCACCTGGGAAGACAAGC
R:
GTGCAGAGCATAGGACAGCTG
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: