MmuALTD0012423-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000078441 | Scamp4
Description
secretory carrier membrane protein 4 [Source:MGI Symbol;Acc:MGI:1928947]
Coordinates
chr10:80069059-80071595:+
Coord C1 exon
chr10:80069059-80069539
Coord A exon
chr10:80069540-80069614
Coord C2 exon
chr10:80071548-80071595
Length
75 bp
Sequences
Splice sites
5' ss Seq
GCGGTATGT
5' ss Score
9.45
3' ss Seq
TAACACTAGTCTTCTTTCAGGTG
3' ss Score
5.63
Exon sequences
Seq C1 exon
TCGAGCCCCGTTGAGGATGGAGCCCACCTCAGGCTTTGCAGAGCAACCTGGGCCTGTGAAGGCTGAAAGTGAGGAGCAAGAGCCGGCGCAATGGCAAGCCCTCCCTGTCCTGTCGGAGCAGCAGTCGGGGGCCGTGGAGCTGATACTGGCCTATGCTGCACCTGTCCTGGACAAGCGCCAGACGTCCCGCCTCCTCCGGGAGGTGTCTGCTGTCTATCCACTTCCTGCCCAGCCCCACCTCAAGCGGGTGCGCCCCAGCCGCAGTGCAGGAGGTGCACAGTCATCGGATCTGCTGCTGTGCTTGGCAGGGCCCTCCGCGGGCCCGCGCTCTCTGGCGGAGCTCCTTCCCAGGCCGGCCGTGGACCCACGTGGCCTGGGCACACCTTTCCTGGTGCCTGTGCCTGCCCGGCCGCCCCTCACCCGAAGCCAGTTTGAGGAGGCACGAGCCCACTGGCCTACATCCTTCCATGAAGACAAGCAG
Seq A exon
GTGACCAGTGCTCTGGCCGGGCAACTCTTCTCCACGCAGGAGCGAGCTGCCATGCAAACCCACATGGAACGGGCG
Seq C2 exon
GTGGCCCCTTCTGCCTGGGTGCCAGGTCAGCTGATACAGAAATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078441-2-3,3-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCCTTCCCAGGCCG
R:
CTGTATCAGCTGACCTGGCAC
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: