MmuEX0041143 @ mm9
Exon Skipping
Gene
ENSMUSG00000078441 | Scamp4
Description
secretory carrier membrane protein 4 [Source:MGI Symbol;Acc:MGI:1928947]
Coordinates
chr10:80065627-80075204:+
Coord C1 exon
chr10:80065627-80065694
Coord A exon
chr10:80073773-80073874
Coord C2 exon
chr10:80075087-80075204
Length
102 bp
Sequences
Splice sites
3' ss Seq
GCATTTTCTGTCACTTGCAGAGC
3' ss Score
10.76
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GGTGGCAGGCGTGGCGGCCCGGTTGCTAGGACTTGGATAAGCGTGGCGTTCGCTCGGGTGTCCCTCAG
Seq A exon
AGCCGACAGCTCCTTTAACTTCATGACATTCTTCTTCATCTTTGGAGCCCAGTTTGTGCTGACTGTCATTCAGGCCATTGGCTTCTCGGGCTGGGGCGCATG
Seq C2 exon
TGGTTGGCTGGCAGCTGTTGGCTTCTTTGGGACCAGTGTTGGGGCTGCTGTGGTTATGCTGGTCCCGGCCATCCTGTTTTCCTTGTCCGCCCTTGTGATGGCCGTCACTATCGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078441_MULTIEX1-6/6=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF041448=SCAMP=FE(19.2=100)
C2:
PF041448=SCAMP=FE(22.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCCGGTTGCTAGGAC
R:
GTGACGGCCATCACAAGGG
Band lengths:
162-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: