DreEX0064349 @ danRer10
Exon Skipping
Gene
ENSDARG00000010531 | scamp4
Description
secretory carrier membrane protein 4 [Source:ZFIN;Acc:ZDB-GENE-050913-40]
Coordinates
chr22:22284103-22286368:+
Coord C1 exon
chr22:22284103-22284259
Coord A exon
chr22:22284334-22284435
Coord C2 exon
chr22:22286251-22286368
Length
102 bp
Sequences
Splice sites
3' ss Seq
AATGGGTTTTGTCTTTTCAGGGC
3' ss Score
10.56
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
TGTATTCCATGACATTATGTGTGAACGTGGTGGGCTGCATAGCCTGGTGGGCCGGCGGTGGTAATGCCACCAACTTTGGGTTTTCGCTGCTCTGGCTGCTGATTTTCAGTCCGTGCAGTTACACCTGCTGGTTCAGACCGCTTTATAAAGCATTCCG
Seq A exon
GGCTGATAGTTCCTTCAACTTCATGGCGTTCTTCTTCATTTTCTTCCTGCAATGTGTGCTTGCCTTTATCCAGAGTTTGGGAATATCCGGTTGGGGCGTTTG
Seq C2 exon
TGGTTGGATTGCCACAGTGATATTCTTTGGCACAGATGTAGTCGCGGCTATATTTATGCTCATCTGCACTCTGCTCTTCACTGTAAACGCACTTCTCATGGCATTCGTTCTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010531-'5-7,'5-4,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(29.4=100)
A:
PF041448=SCAMP=FE(19.2=100)
C2:
PF041448=SCAMP=FE(22.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGTGTGAACGTGGTGGGC
R:
CGAATGCCATGAGAAGTGCGT
Band lengths:
250-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]