GgaEX1051012 @ galGal3
Exon Skipping
Gene
ENSGALG00000001030 | SCAMP4
Description
NA
Coordinates
chr28:1754049-1755123:-
Coord C1 exon
chr28:1754967-1755123
Coord A exon
chr28:1754361-1754462
Coord C2 exon
chr28:1754049-1754166
Length
102 bp
Sequences
Splice sites
3' ss Seq
ACGTCTCTGTTCCTTCGCAGGTC
3' ss Score
11.81
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
TTTACTGCATCACGCTGGTCGTGAACATCATTGCCTGCCTGGCGTGGTGGATTGGAGGTGGCTATGGTGTCAACTTTGGCTTGGCCATCCTCTGGCTGATCCTCTTCAGCCCCTGCAGCTACGTCTGCTGGTTCCGACCGGTGTACAAAGCCTTTCG
Seq A exon
GTCGGACAGCTCCTTTAATTTCATGACCTTCTTCTTCGTCTTCGGCATGCAGTTCGTCCTCACCTTCCTGCAGGCAGTGGGTTTCTCCGGATGGGGAGCGTG
Seq C2 exon
TGGGTGGTTGGCGGCCATCACGTTCTTCAGCACCAACGTGGCAGCTGCTGTGTTCATGCTGTTCCCTGCCATTATGTTCACGATGGCAGCGCTGGCGATGCTTGTCTGCATTTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001030-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(29.4=100)
A:
PF041448=SCAMP=FE(19.2=100)
C2:
PF041448=SCAMP=FE(22.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACTGCATCACGCTGGTCG
R:
GCGCTGCCATCGTGAACATAA
Band lengths:
249-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]