DreEX6066976 @ danRer10
Exon Skipping
Gene
ENSDARG00000040274 | scamp5b
Description
secretory carrier membrane protein 5b [Source:ZFIN;Acc:ZDB-GENE-120215-76]
Coordinates
chr18:50096766-50099089:+
Coord C1 exon
chr18:50096766-50096922
Coord A exon
chr18:50098727-50098828
Coord C2 exon
chr18:50098972-50099089
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTTGTTATTATTTGTTTCAGGAC
3' ss Score
8.24
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TGTACGGCGTGACCCTGCTGGTGAATTTCTTCGGCTGTATGGCGTGGATGTTTGGTGGCGGTGGAGTCACAAACTTTGGCATGTCGATGATTTGGGTGATTCTCTTCACACCCTGCTCTTATGTGTGCTGGTTCCGGCCCATTTACAATGCCTTCAA
Seq A exon
GACTGACAGCTCGTTCTACTTCATGGCGTTCTTCTTTGTCTTCATGGCACAACTTTTCATCGCTATCATTCAGGCCATCGGTATTCCAGGATGGGGTGTTTG
Seq C2 exon
TGGCTGGTTGGGCACCATCTCCTTCTTCGGCACCAGTATCTTTGCTTCCATCATCATGTTGATCCCTACACTCATGTTCACCGCCGTCTCCGTCATCTCCTTCCTTGCACTAACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040274-'6-9,'6-7,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(29.5=100)
A:
PF041448=SCAMP=FE(19.3=100)
C2:
PF041448=SCAMP=FE(22.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGTGAATTTCTTCGGCT
R:
GTGCAAGGAAGGAGATGACGG
Band lengths:
252-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]