BtaEX6077583 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021318 | SCAMP5
Description
Bos taurus secretory carrier membrane protein 5 (SCAMP5), mRNA. [Source:RefSeq mRNA;Acc:NM_001166565]
Coordinates
chr21:34091629-34093488:-
Coord C1 exon
chr21:34093332-34093488
Coord A exon
chr21:34092170-34092271
Coord C2 exon
chr21:34091629-34091746
Length
102 bp
Sequences
Splice sites
3' ss Seq
AGATGTCTCCTCTGTTGCAGGAC
3' ss Score
8.98
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TGAATAGCGTCACGCTGGCCGTGAACCTGGTGGGCTGTCTCGCGTGGCTGATCGGAGGCGGGGGAGCCACCAACTTTGGCCTCGCCTTTCTCTGGCTCATCCTCTTCACACCCTGCTCCTACGTCTGCTGGTTTCGGCCCATTTACAAGGCCTTCAA
Seq A exon
GACCGACAGCTCCTTTAGCTTCATGGCATTCTTCTTCACCTTCATGGCCCAGCTGGTCATTAGCATCATCCAGGCCGTGGGCATCCCAGGCTGGGGTGTCTG
Seq C2 exon
CGGCTGGATCGCCACCATCTCCTTCTTCGGGACGAACATTGGCTCAGCAGTGGTGATGCTCATCCCCACCGTCCTGTTCACGGTCATGGCCGTCTTTTCCTTCATTGCCCTCAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021318-'5-7,'5-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(29.4=100)
A:
PF041448=SCAMP=FE(19.2=100)
C2:
PF041448=SCAMP=FE(22.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCTGGTGGGCTGTCTC
R:
GCAATGAAGGAAAAGACGGCC
Band lengths:
244-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]