MmuEX0041144 @ mm9
Exon Skipping
Gene
ENSMUSG00000040722 | Scamp5
Description
secretory carrier membrane protein 5 [Source:MGI Symbol;Acc:MGI:1928948]
Coordinates
chr9:57293179-57295040:-
Coord C1 exon
chr9:57294884-57295040
Coord A exon
chr9:57293879-57293980
Coord C2 exon
chr9:57293179-57293296
Length
102 bp
Sequences
Splice sites
3' ss Seq
AACCATCTTCTCTGCCATAGGAC
3' ss Score
9.46
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
TGAACAGCGTCACGCTGGCCGTGAACCTGGTGGGCTGTCTCGCGTGGCTGATCGGAGGCGGGGGAGCCACCAACTTTGGCCTGGCCTTTCTCTGGCTCATCCTCTTCACACCTTGCTCCTACGTCTGCTGGTTTCGGCCCATTTACAAGGCCTTCAA
Seq A exon
GACAGACAGTTCCTTCAGCTTCATGGCATTCTTCTTCACCTTCATGGCTCAGCTGGTCATCAGCATCATCCAGGCTGTGGGAATTCCAGGCTGGGGTGTCTG
Seq C2 exon
CGGCTGGATTGCCACCATTTCCTTCTTCGGGACGAACATCGGCTCAGCAGTGGTGATGCTCATTCCCACGGTCATGTTCACAGTTGTGGCCGTCTTTTCCTTCATTGCTCTTAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040722-'10-10,'10-6,11-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(29.4=100)
A:
PF041448=SCAMP=FE(19.2=100)
C2:
PF041448=SCAMP=FE(22.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCTGGTGGGCTGTCTC
R:
GCAATGAAGGAAAAGACGGCC
Band lengths:
244-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: