RnoEX6035940 @ rn6
Exon Skipping
Gene
ENSRNOG00000054008 | Scamp5
Description
secretory carrier membrane protein 5 [Source:RGD Symbol;Acc:68356]
Coordinates
chr8:62224648-62226319:-
Coord C1 exon
chr8:62226163-62226319
Coord A exon
chr8:62225127-62225228
Coord C2 exon
chr8:62224648-62224765
Length
102 bp
Sequences
Splice sites
3' ss Seq
GACCTTCTCCTCTGCCACAGGAC
3' ss Score
9.97
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TGAACAGCGTCACGCTGGCCGTGAACCTGGTGGGCTGTCTCGCGTGGCTGATCGGAGGCGGGGGAGCCACCAACTTTGGCCTGGCCTTTCTCTGGCTCATCCTCTTCACACCTTGCTCCTACGTCTGCTGGTTTCGGCCCATTTACAAGGCCTTCAA
Seq A exon
GACAGACAGCTCCTTCAGCTTCATGGCATTCTTCTTCACCTTCATGGCTCAGCTGGTCATCAGCATCATCCAGGCTGTCGGGATTCCGGGCTGGGGTGTCTG
Seq C2 exon
CGGCTGGATCGCCACCATCTCCTTCTTCGGGACAAACATCGGCTCAGCGGTGGTGATGCTCATCCCCACGGTCATGTTCACGGTTGTGGCCGTCTTTTCCTTCATTGCCCTTAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054008-'15-17,'15-14,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(29.4=100)
A:
PF041448=SCAMP=FE(19.2=100)
C2:
PF041448=SCAMP=FE(22.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCTGGTGGGCTGTCTC
R:
GCAATGAAGGAAAAGACGGCC
Band lengths:
244-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]