HsaEX0056372 @ hg19
Exon Skipping
Gene
ENSG00000198794 | SCAMP5
Description
secretory carrier membrane protein 5 [Source:HGNC Symbol;Acc:30386]
Coordinates
chr15:75305018-75310876:+
Coord C1 exon
chr15:75305018-75305146
Coord A exon
chr15:75310211-75310312
Coord C2 exon
chr15:75310759-75310876
Length
102 bp
Sequences
Splice sites
3' ss Seq
AGCCACCTCCTCTGCCGCAGGAC
3' ss Score
6.69
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AGAAAGTGAACAACTTCCCACCATTGCCCAAATTCATCCCGCTGAAGCCATGTTTCTACCAAGACTTCGAGGCAGATATTCCTCCCCAGCATGTCAGCATGACCAAGCGCCTCTACTACCTCTGGATGT
Seq A exon
GACTGACAGCTCCTTCAGTTTCATGGCATTCTTCTTTACCTTCATGGCTCAGTTGGTCATCAGCATCATCCAGGCCGTGGGCATCCCAGGCTGGGGCGTCTG
Seq C2 exon
CGGCTGGATTGCTACCATCTCCTTCTTCGGAACGAACATTGGCTCGGCGGTGGTGATGCTAATTCCCACTGTCATGTTCACAGTGATGGCCGTCTTTTCCTTCATCGCCCTCAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198794_MULTIEX2-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=PU(23.7=95.5)
A:
PF041448=SCAMP=FE(34.0=100),PF144761=Chloroplast_duf=PU(23.0=65.7)
C2:
PF041448=SCAMP=FE(39.0=100),PF144761=Chloroplast_duf=FE(39.0=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACAACTTCCCACCATTGC
R:
CATGCTGAGGGCGATGAAGG
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)