GgaEX1051014 @ galGal4
Exon Skipping
Gene
ENSGALG00000014116 | SCAMP5
Description
secretory carrier membrane protein 5 [Source:HGNC Symbol;Acc:HGNC:30386]
Coordinates
chr10:1881981-1882753:-
Coord C1 exon
chr10:1882597-1882753
Coord A exon
chr10:1882279-1882380
Coord C2 exon
chr10:1881981-1882098
Length
102 bp
Sequences
Splice sites
3' ss Seq
GACGGAGCCCTCTCTTGCAGGAC
3' ss Score
6.66
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
TGAACAGCATCACCTTGGCGGTGAATCTCGTTGGCTGCCTCGCATGGCTGATTGGAGGCGGCGGAGCTGTTAATTTGGGACTGGCAATTCTCTGGCTCATTCTCTTTACGCCCTGCTCCTATGTCTGCTGGTTTAGACCTATTTACAAAGCTTTCAA
Seq A exon
GACAGACAGCTCCTTCAGCTTCATGGCCTTCTTCTTCACCTTCATGGCCCAGCTGGTGATCAGCATCATCCAGGCCGTGGGGATTCCTGGCTGGGGTGTCTG
Seq C2 exon
CGGCTGGATTGCAGCAATCTCCTTCTTTGGGACCAATGTGGGGTCAGCTGTGGTGATGCTGATCCCCACCATCCTGTTCACAGGGATGGCAGTCTTCTCCTTCATCGCCCTCACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014116-'12-10,'12-8,13-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(29.4=100)
A:
PF041448=SCAMP=FE(19.2=100)
C2:
PF041448=SCAMP=FE(22.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAATCTCGTTGGCTGCCTC
R:
GCGATGAAGGAGAAGACTGCC
Band lengths:
245-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]