DreEX0064353 @ danRer10
Exon Skipping
Gene
ENSDARG00000018743 | scamp5a
Description
secretory carrier membrane protein 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3188]
Coordinates
chr25:31428559-31444144:-
Coord C1 exon
chr25:31443988-31444144
Coord A exon
chr25:31441129-31441230
Coord C2 exon
chr25:31428559-31428676
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATTCACTTTGTCTTCTGCAGGTC
3' ss Score
11.51
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TGAACAGTGCCACTCTAGCAGTGAACCTGATTGGCTGTCTAGCATGGATGTGCGGAGGAGGCGGAGCAACCAATTTTGGCATGGCTATTCTGTGGCTGATCCTGTTCACCCCTTGTTCATACGTGTGCTGGTTTAGGCCCATCTACAAGGCCTTCAA
Seq A exon
GTCAGACAGTTCTTTTAACTTCATGGCGTTCTTTTTCGTCTTCATGGCGCAAGTGGTGATTAGCATCATCCAGACGGTTGGAATCCCAGGATGGGGAGTTTG
Seq C2 exon
TGGCTGGTTGGCCACCATCACTTTTTTCAGCACTAATATCGGCTCTGCTGTTGTTATGCTGATTCCAACTATAATGTTCACTGCCGTGGCCGTGCTCTCCTTCATCGCCCTCACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018743-'9-5,'9-4,10-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(29.5=100)
A:
PF041448=SCAMP=FE(19.3=100)
C2:
PF041448=SCAMP=FE(22.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTGAACCTGATTGGCTG
R:
AGTGAGGGCGATGAAGGAGAG
Band lengths:
256-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]