RnoEX0078302 @ rn6
Exon Skipping
Gene
ENSRNOG00000018271 | Scamp4
Description
secretory carrier membrane protein 4 [Source:RGD Symbol;Acc:68354]
Coordinates
chr7:11972668-11975338:-
Coord C1 exon
chr7:11975182-11975338
Coord A exon
chr7:11973956-11974057
Coord C2 exon
chr7:11972668-11972785
Length
102 bp
Sequences
Splice sites
3' ss Seq
GCATCTTCTGTCATTTGCAGAGC
3' ss Score
10.47
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
TTTACTGCACCACGCTGGGTGTAAACCTAGTGGCCTGCCTGGCCTGGTGGATTGCGGGCGGAGCGGGTGCCAATTTTGGCCTGGCCATGCTCTGGCTTGTTCTCTTCACTCCCTGCAGCTATGTGTGCTGGTTCCGGCCTGCCTACAAGGCCTTCCG
Seq A exon
AGCCGACAGCTCCTTTAACTTCATGGCATTCTTCTTCATCTTTGGAGCCCAGTTTGTGCTGACTGTCATTCAGGCCATCGGCTTCTCGGGCTGGGGCGCGTG
Seq C2 exon
TGGTTGGCTGGCCACCATTGGGTTCTTTGGGACCAGCGTTGGGGCTGCTGTGGTGATGCTGATCCCAGCCATCATGTTTTCCTTATCCGCTGTCGTGATGGCCATCACTATTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018271-'13-10,'13-9,16-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(29.4=100)
A:
PF041448=SCAMP=FE(19.2=100)
C2:
PF041448=SCAMP=FE(22.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGTGTAAACCTAGTGGC
R:
CCATCACGACAGCGGATAAGG
Band lengths:
245-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]