MmuALTD0012472-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000020877 | Scrn2
Description
secernin 2 [Source:MGI Symbol;Acc:MGI:1343092]
Coordinates
chr11:96893403-96894284:+
Coord C1 exon
chr11:96893403-96893602
Coord A exon
chr11:96893603-96893654
Coord C2 exon
chr11:96894069-96894284
Length
52 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
AAGTTCCTCTTCTTATACAGGAG
3' ss Score
6.67
Exon sequences
Seq C1 exon
GCTGGCTTTGGAACGGAGCAGCACTGCCCAGGAGGCTGTTCACGTGATTGCAGGCTTGCTGGACCGCTATGGGCAGGGAGGCAGCTGCCGGGAGGATCCAGAGCCGTTCTGCTATCACAACACCTTTTTACTGGCTGATCGGACAGAGGCGTGGGTGCTGGAGACAGCTGGGAGCCTGTGGGCTGCTCAGCGGATCCAGG
Seq A exon
GTAGGAGTCTAGCGTAGAGCCTGCCTCCAAGAGGGAACCTAGACCTCCCCAG
Seq C2 exon
GAGGTGCCCGGAATATTTCCAACCAGCTGAGCATTGGTACAGACATCTCAGCTGAACACCCGGAGCTCCGCAGCCATGCCAAGGCTCAGGGTTGGTGGACTGGGCAGGGCCTCTTTGACTTTGCGGAGGTCTTCTCCCTGACCCAGCAGCCTGTGCGCATGGAGGCTGCCAAGGCCCGCTTCCGGGCAGGGTGTGAGATGCTGCAGCGGCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020877-6-4,7-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(38.1=100)
A:
NA
C2:
PF0357710=Peptidase_C69=PD(40.3=97.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGGCTGATCGGACAGAGG
R:
CGGGTGTTCAGCTGAGATGTC
Band lengths:
134-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: