MmuALTD0012472-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000020877 | Scrn2
Description
secernin 2 [Source:MGI Symbol;Acc:MGI:1343092]
Coordinates
chr11:97032089-97032970:+
Coord C1 exon
chr11:97032089-97032288
Coord A exon
chr11:97032289-97032340
Coord C2 exon
chr11:97032755-97032970
Length
52 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
AAGTTCCTCTTCTTATACAGGAG
3' ss Score
6.67
Exon sequences
Seq C1 exon
GCTGGCTTTGGAACGGAGCAGCACTGCCCAGGAGGCTGTTCACGTGATTGCAGGCTTGCTGGACCGCTATGGGCAGGGAGGCAGCTGCCGGGAGGATCCAGAGCCGTTCTGCTATCACAACACCTTTTTACTGGCTGATCGGACAGAGGCGTGGGTGCTGGAGACAGCTGGGAGCCTGTGGGCTGCTCAGCGGATCCAGG
Seq A exon
GTAGGAGTCTAGCGTAGAGCCTGCCTCCAAGAGGGAACCTAGACCTCCCCAG
Seq C2 exon
GAGGTGCCCGGAATATTTCCAACCAGCTGAGCATTGGTACAGACATCTCAGCTGAACACCCGGAGCTCCGCAGCCATGCCAAGGCTCAGGGTTGGTGGACTGGGCAGGGCCTCTTTGACTTTGCGGAGGTCTTCTCCCTGACCCAGCAGCCTGTGCGCATGGAGGCTGCCAAGGCCCGCTTCCGGGCAGGGTGTGAGATGCTGCAGCGGCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020877-9-4,10-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(38.1=100)
A:
NA
C2:
PF0357710=Peptidase_C69=PD(40.3=97.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGGCTGATCGGACAGAGG
R:
CGGGTGTTCAGCTGAGATGTC
Band lengths:
134-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types