RnoALTD0026761-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000010214 | Scrn2
Description
secernin 2 [Source:RGD Symbol;Acc:1307741]
Coordinates
chr10:84969160-84970041:+
Coord C1 exon
chr10:84969160-84969359
Coord A exon
chr10:84969360-84969411
Coord C2 exon
chr10:84969826-84970041
Length
52 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
AAGTTCCTCTTCTTACACAGGAG
3' ss Score
6.04
Exon sequences
Seq C1 exon
GCTGGCTTTGGAACGGAGCAGTACTGCCCAGGCGGCTGTGCACGTGATTGCGGGCTTGCTGGACCGCTATGGGCAGGGAGGCAGCTGCCGGGAGGATCCGGAGCCTTTCTGCTATCACAACACCTTTTTACTGGCTGATCGGACAGAGGCGTGGGTGCTGGAGACAGCTGGGAGGCTGTGGGCTGCTCAGCGGATCCAGG
Seq A exon
GTAGGAGTCTAGCATAGAGCCTGCCTCCAAGAGGGAACCTAGACCTCCCCAG
Seq C2 exon
GAGGTGCCCGAAATATTTCCAACCAACTGAGCATTGGAACAGACATCTCAGCAGAACACCCAGAGCTCCGCAGCCATGCCAAGGCTCAGGGTTGGTGGTCTGGGCAGGGCGTCTTTGACTTTGCGGAGGTCTTCTCCCTGACCCAGCAGCCTGTGCGCATGGAGGCTGCCAAGGCCCGCTTCCGGGCAGGGTGTGAGATGCTGCAGCGACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010214-11-4,12-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(35.4=100)
A:
NA
C2:
PF0357710=Peptidase_C69=FE(38.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGGCTGATCGGACAGAGG
R:
TGGGTGTTCTGCTGAGATGTC
Band lengths:
134-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]