RnoINT0131862 @ rn6
Intron Retention
Gene
ENSRNOG00000010214 | Scrn2
Description
secernin 2 [Source:RGD Symbol;Acc:1307741]
Coordinates
chr10:84969160-84970041:+
Coord C1 exon
chr10:84969160-84969359
Coord A exon
chr10:84969360-84969825
Coord C2 exon
chr10:84969826-84970041
Length
466 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGA
5' ss Score
6.45
3' ss Seq
AAGTTCCTCTTCTTACACAGGAG
3' ss Score
6.04
Exon sequences
Seq C1 exon
GCTGGCTTTGGAACGGAGCAGTACTGCCCAGGCGGCTGTGCACGTGATTGCGGGCTTGCTGGACCGCTATGGGCAGGGAGGCAGCTGCCGGGAGGATCCGGAGCCTTTCTGCTATCACAACACCTTTTTACTGGCTGATCGGACAGAGGCGTGGGTGCTGGAGACAGCTGGGAGGCTGTGGGCTGCTCAGCGGATCCAGG
Seq A exon
GTAGGAGTCTAGCATAGAGCCTGCCTCCAAGAGGGAACCTAGACCTCCCCAGGTACTGCCCTCCACTTCTGGACGCTACCATTTTGTTCTGAGAGCCTTGGGCAGTGGGAGAGCTGGTGGGCCAGGGGGCGGCCAGGGAGGGATACCCTGGGGACTAGAAATGAACGCACTTAGGAACTCCTTTCTCCTTCACATGGACAAATACTCCCATGCTTTAGCCTGCCCCTTCCTCTGGGTAGCCTTCCTGGATCTCCCTGTGTAGTTAGGGCATTTGCACGCAGCTACCACTTTGCTGTGTCACATCTGTCCCTATGATTTCGTTCTGATTGATTTGTCAGTCTCCTCATCACCATAGGCCCCTTGAAGGCAGGTTGTACTTGTTCAAACTGTCATCTAAGTAGCTCACCCAGGGCCTAGCACATCATGGATGCCCCATAGTGACAAACAAGTTCCTCTTCTTACACAG
Seq C2 exon
GAGGTGCCCGAAATATTTCCAACCAACTGAGCATTGGAACAGACATCTCAGCAGAACACCCAGAGCTCCGCAGCCATGCCAAGGCTCAGGGTTGGTGGTCTGGGCAGGGCGTCTTTGACTTTGCGGAGGTCTTCTCCCTGACCCAGCAGCCTGTGCGCATGGAGGCTGCCAAGGCCCGCTTCCGGGCAGGGTGTGAGATGCTGCAGCGACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010214:ENSRNOT00000013580:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(35.4=100)
A:
NA
C2:
PF0357710=Peptidase_C69=FE(38.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGGAACGGAGCAGTACT
R:
CTGCTGGGTCAGGGAGAAGA
Band lengths:
345-811
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]