BtaINT0129704 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012966 | SCRN3
Description
secernin 3 [Source:HGNC Symbol;Acc:HGNC:30382]
Coordinates
chr2:22422605-22425966:-
Coord C1 exon
chr2:22425767-22425966
Coord A exon
chr2:22422818-22425766
Coord C2 exon
chr2:22422605-22422817
Length
2949 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
CCTCTCTTCTTTCAAAATAGAGG
3' ss Score
7.18
Exon sequences
Seq C1 exon
ACTTGGCCTTGAAAGAGGTGATACAGCTGAAAAAGCCCTCAATGTCATTGTTGATTTATTAGAAAAATATGGCCAGGGTGGAAATTGTTCAGAGGGCAGGATGGTATTTAGCTATCACAACAGTTTCCTGATAGCAGATAGAAATGAAGCCTGGATTCTGGAGACTGCAGGAAAGTACTGGGCAGCAGAAAAAGTAGAAG
Seq A exon
GTATGGACAGCTTTTCATGATTTAATTTGTTTTACAGTTAATAAAATACCTCCTAATTGCAGACATTTCACTTAGTTGTTTTCCAAGATTTATACTCCAGTGCAATGAAGGGGAAAACTGCAGGGGAAATGAAAAAATATGAAAGAACATACAGTGAAAGAACTCTATAAAGAGCTTTCTTGAAAAAGAGGAAAAGGTGTTATTATCTCTTTTTCATAAATATGATATTAATTTCATATAACCTGTGTACATTTTCTGTGAAGTAACTCTTGTATGCTTTATAGTAGTTTTTTACCTTTTAATGAGATAAAACCATTACTTTATTATTTTTTCATGTTTTAAACTTTGGACTGAACTCCAAAATTTCATCATGTGTGGATATGGAGGTAAAGACTAGGGAGTGTTACTGGGGATTGGTGATTGTGAGTTAGTGGTTAGAAAGAATATGTTAGTAGTAACAGTAGTAAAGTGAAACATTTAATGTAATTGAGTAAATAAAACAGTTGATTGTTTTAGAATGATTTGCCTTTTTTTTTAAAATTTCTTTGTGATCATATATACTCATTTTCCAGTGAGGAAATCCAGAGATATGAAATTATGTAGTCAGGGCAGTGAATGATAGAATTTATTGTTTTTAAATTTCATTTATTTATTGTTTTAGCCTTGGAATTTAAGTATTTCCATCCTGACTCTTTGTTCAGTATTCCTTCACTTGAGTGTAGTCTTGTGCTAAGGCATATTCACATACCTTTTGTGTACTTACCCCTGGATCTCATAGTTTTACAGATACACATGTGAAAATATTAAATAGTACATGAATAACACATACGTATATATGCCATGAATATTTAAAGAAAGGAAAAGTCATTGTGGACTGGAGAAGTTTAGAAACTCTTCATGAAGGTAGCTTTGAGCTTTGTAGGATTTGGATGCTATTTTTCACAACAGGTCATTGACAGTTGTTTTGATGGACATTTTATTTTATATTTTGCATGCATGTTTATCAATACATAAAACTTAATTGGAACTATTTTTCTTATTATGATAATTAGCCTGATCATACCATTAATTACTTTTTATTTTGTCAAGTATGCTACATGCAAGAGAAAAAATGAGTGTTTTTTGTTGAAAAAGTTAGCCCCACTGAGCCATCCAAAATGAACACCTTCATTGAGTCTGATTATTCAGTTGCAGATTAACTTTGCCAACTTGTTTCTCTTCCTAATAGTAAATGAGCCCACGAACTAAATAGCTTAACTCTAGGGAATTATTTTACTAGATGGAAAATTCTTCTTCTTTGACTTTGATTCTATCATGACTTAAGTCTATTATTGTAGTGAGACCGTCCCAAATATGACTTCATTAGAGTAATTTAACTGATTTCTACTTGGCCAACTGTCATTCTAAACTGTTTTAAAATGTTATTAATTTTTATTTATCATATCTATTTCATTTATTATGATTTGTTTAGAATAGGCTTTTATTGTTTCTTCTGTTTTGTATTTTAATTGAAAATTTTGTTATAACTTAAGTGTCACGATATTTTTAGAAGCCTTCTATTTCTGTTCTAAATTACTTATGGCTATTTTTTGAACAGTAATTCATATAAAAGACTAATATCTAAAATATATAAATAACTGTCAAAATTCAACAGTAAAAAGACAATCCAACTAGAAAAATGAACAAGAAGACCCAAAGAGACATTTTGCTGAAAAGGATATACAGATATCACAAAAGCACACAAAATGATGTTTAACATCATTACCCATTAGAGAAATGCAAGCTAAAATCACAATGAGATATTATACCTCTATCAGAATGGCTGAGAAATTTTTAAATTTATTTATTTTAATTGGAAGATATTTGCGTTACAATATTGTATTGTTTTCTGCCATACATCAACATGAATCAGCCATAGGCATACATGTGTCTGGAACCTCCCTCTTGAACCTTCCTCTTACCTGCCACTCTATCCCACCCCTCTAGGTTGTCACAGAGCAGTGGTTTGAGCTCCCAGCATCATACAGCAAATTCCCACTGGCTATCTATTTTACTGGAATGGCTAAACATTTTTAAATGACTCTACCAAATGCTAGTGAGAAGGTGGGGAATGGGTCACAGCTACATTGCTAGTAAGAATGTACAGTCACTCAGGAAAACATTTTGGCAGTTAAAAAAAGGATCTTAATATGTAACTATTATTCAGTGTAACACTTACAATCTTGTGCATTTATCTCTGAGAAATAAAACTTAAATGCACACAAAAACCTGTACATGAATTTGTATGGCAGCTTTTCCCATGATAGGCAGAAACTGGAAAGAACCAAGCAGTCCTTTAACTTGGGAATATTTAAATGAACTGTAGTATGCCTATACCATGGGATACTACTCAGCAATAAAAAGGAATGAACTGTTGATACATATAATAACCTGGAATAATCTTTAGGAAATTAAACTGAGGGGGAAAAAAAGCCTAAAATTATATATTGTATGATTCCATTTATATGGTTTTTCTTGAAATGACAATTATAGAAATGAATAACAGATGGTTGCCTGGGGTTAATGAAAGGGTGGGTGTGGGAGATGAGTGGGGGTGGCTATGAAAGGGCAACATGAGTGATCATTGTGATATCATCTTGACAGTATGACTATCAATACTTTGGTTGTGATATCATACAAAGTGTTACCATTTGGGGAGACAGTATAAAGATGCATAGTTTGTTCTTTAATTCTTATAATTGCATGTGAATCCATAGTTACCTCAAAATAAAAAGTTTAATTTAGAAAACTATTTATGCATTTTAGTGTGTAATAAATAGATGTACACCGTACAACATTTAGAAGCCTATATTTACATTGAAATAGTGATTAAGGATCATAATGTACAAAGATAGATACATTACATTAAATGTGACTTTTCTTCTCCCTTCCTCTCTTCTTTCAAAATAG
Seq C2 exon
AGGGAGTTCGCAATATTTCTAATCAGCTTTCTATAACGACCAAAATTGATCGGGAACACCCAGACATGAGAAACTATGCCAAGCAGAGAGGTTGGTGGGATGGGAAAAAGGAATTCGATTTTGCTGCAACATACTCTTATCTTGACACAGCCAAGATGATGATTTCACCAGGCAGATACTGTGAAGGCTACAAACTTCTGAATAAGCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012966:ENSBTAT00000017239:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(25.2=100)
A:
NA
C2:
PF0357710=Peptidase_C69=FE(26.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]