GgaINT1024593 @ galGal4
Intron Retention
Gene
ENSGALG00000014270 | SCRN3
Description
secernin 3 [Source:RefSeq peptide;Acc:NP_001244270]
Coordinates
chr7:16410427-16411277:-
Coord C1 exon
chr7:16411078-16411277
Coord A exon
chr7:16410640-16411077
Coord C2 exon
chr7:16410427-16410639
Length
438 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TTTTTTCACCTTACAAACAGGTG
3' ss Score
9.49
Exon sequences
Seq C1 exon
GCTTGGACTTGAGAGAGCAGACACAGCCGAAAAGGCTCTTACTGTCATAGTTGATTTGCTAGAAAAATACGGCCAGGGAGGAAACTGCATGGAGAGCCACATGGCCTTTACGTACCATAACAGCTTTCTGATAGCCGACAGAAAGGAAGCGTGGGTGCTGGAAACGTCAGGAAAACATTGGGCAGCCGAAAAAGTAGAAG
Seq A exon
GTATGGATGACGCTCTCTTTAAGTCTTTTGGATGTGGTGACAAGTGGCAATCTTCTAGCTTTCATTTACCACTTCGTGAGGGAACGAAACTAGCCTTGGGACATGGATGTGTGCCTGTAGGCAGCGGGAGTTGCATCCTCGGGTAGCAAGTGCTCAGAGGGCCTTTTCAGAGTTCTGCACTCGGAGAACAGAGGACAGCAAGCAGGTAAGGATGAGAACAGCAGCAGTACGTACCGTCTTAAGGATGGTAGTAATGAATTCCGTTGGGTAACAGGTCGATGTGCCCTGAAGTATCAAGCTATGTCTTGAGAACGTAAAGATAGGAACAGTCAGGATGGAGCTTGAAATGTGATGGTAGCAGTGGAATTAAACGTAAACAGTGGGACAGGAAAAAGCATTCACTGTATTCAAATGATTCTTTTTTCACCTTACAAACAG
Seq C2 exon
GTGGTGTGCGGAATATTTCCAACCAGCTCTCTATCACTACCAAGATTGACAGAGAACATCCGGAGATGAGGGAATATGCCAAAAGCAAGGGCTGGTGGGATGGGGAAAAGGAATTTGATTTTGCTGCCACGTATTCTTATGTAAATACTGCCAGAATGACTACATCCAGGAGCCGCTACTGTGAAGGCTACAAACTTCTGAACAAACATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014270:ENSGALT00000023082:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(23.3=100)
A:
NA
C2:
PF0357710=Peptidase_C69=FE(24.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAGACACAGCCGAAAAG
R:
TCCTGGATGTAGTCATTCTGGCA
Band lengths:
358-796
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]