HsaINT0146148 @ hg19
Intron Retention
Gene
ENSG00000144306 | SCRN3
Description
secernin 3 [Source:HGNC Symbol;Acc:30382]
Coordinates
chr2:175265718-175269043:+
Coord C1 exon
chr2:175265718-175265917
Coord A exon
chr2:175265918-175268830
Coord C2 exon
chr2:175268831-175269043
Length
2913 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
CTCTTCTTCTTTGAAAATAGAGG
3' ss Score
4.44
Exon sequences
Seq C1 exon
ACTTGGCCTTGAAAGAGCTGATACAGCTGAAAAAGCCCTCAATGTCATTGTTGACTTACTAGAAAAATATGGCCAGGGTGGAAATTGCACAGAGGGTAGAATGGTATTTAGCTATCACAACAGTTTCCTGATAGCTGATAGGAATGAAGCCTGGATTCTGGAGACTGCAGGGAAGTACTGGGCAGCAGAAAAAGTACAAG
Seq A exon
GTATGGACAACTTTTTGTGATTTAACTTGTTTTTGCAATTAATAAAATACACCCTTACCTATAGATATTGCATTTAATTGCTTCCAAGATTAATAATCTAGTGTAATGAAGGGTTGAACTGCAAGGGAAATTTAAAAATTTGAAAGAACAGTGAAAAAGTGCCATAAAGAGCTTTCTTGAAAAAGATAAAAAGGTAGCATTACCTCTGGGAATATGAATTTCATATAACCTGTATATACTTTCTTTGCTGCAGCTCTTGGCCATTTCATAGTACTTTTTCACTTTAATAATCCCTTACAATTTCTTCCCCTTTAAACTTTGGGCTGCACTCCAAAATCTTATGTGTAAGTGTGGAGGTGAGGAAATGGGAGTGGGGTTAGAGACAGGTGTTTGTGAGTTGGTGGTTGAAAAAGCTGTGTTGATACAATAGTAAAACACAAAAGTTTGATATCTTTGAATAAAACAACATTATTTGATTGTTTTAGAATGCTTTGATTTTTCATTCTCATTTTCTTTGTGATCATATATTCCTCTAATTTTTCAAGTGAGGAAAGCCAGAGATGTAAAGTGATTTAAGGTGGTAAATGAAAGACCTAGAATTTAAATCTTTTCATCTTGAATCTCATCACTAGAACATAGCCTTATGTTTAAGCATAATCATGTCCTTCTCGGGTATTTAACTTCTGGACTCCTAGTTTACTAGAGAGATAAGATACACATGTGAAAATGTTAAATGGTGCACGAATGATACAGACACATAGATGATTTGAACATTTAGAGAACAGAAAGGTTATTATCGTGAGCTAGAGGAGTTCAGAAAGGCTTCATGAAGGTAGCCTTGAACTTTGGAGGATTTGGGTGTTATTTTTCAAAACAGGTCATTACCAGTTGTTTTGACGGACATTTTGTTTTATGTTTTGCATATATGTTTATTAATATATAACATTGTAGTTAGACTTTTTCTTTTTGTGATAATTGGCTTGATAATACCATTGAGCACTTTTATTTTATTAAATGTACTACGTGCAAGAGAGAACTGAATAAATACATTTTGTTGAAAAAGTGCCACCTGGCCATCTAAAATGAACACCTTCATTGGGTCTCATTGTCTAGCTGTAGATTAATTTTGCCAATTGTTTTCTCTTTCTATTACTAACTAAGCCCAAGAACTAAATTGTTAAATGATAGGGAATTATTTATTAGATGGAAAATTATTGGCTGGGCATGGTGGCTCATGCCTATAATCCCAGCACTTTGAGAGGCTGAGGCAGGAGGATCACTTCAGCCCAGGAGTGTGAGACCAGCTTGGGCAACACAGTGAGACCTCAATTCTACAAAAAATACGAAAATTAGCTGAGTGTGGTGGTGTGTACCTATAGTTCCAGCTACTCAAGAGGCTGAGGTGGGGAGGATAGCTTGAACCCAGGAGGTCGAGGCTGCAGTGAGCTATTATTATGCCACTGTACTCTAGCCTGGGCGAGAGAGTGAGACCCTGTTGAAAGAAAAGAAAAGAGGGAAGGAGAAGGGGAAAGAAAGAAAAGAAAATTCTTCCATCTGATTCTTTCATGACTTGGATCTGGTTTTTGTAATGAGGGTATCCCAAGTATGACCTCATTAGAGTAATTTCATTGATTTTTACTTGACAGACTGTCATTTCAGCTGTTTTTAAAACATTATCGATTTTTGTTTATCGTGATCTGTTTCATTTAGTATAATCTCTAAGACAGGCTTTTATTTTTTCTATTTTGTATTTTAGTTGAAAACTTTGTTTATAGCTTCATGCCATAATATTTTTGGAAGTCATATATTTTGGTTCTAGACTTATTTATAATTTAAAAAAATTTATAGAAAGGACTACTATCTGGAATATATAAAGAGCAGTCAAAACTCAGTAGTAAAAAAAAAAAAATCCAGTTAGAAAATAGGCAAAAGATATGAAGAGTCATTTCACCCAAAGGGATATACAGATTTGAAATAAGCATGAAATGATGTTCAACATTATTAGCCATTAGGGAAATGCAAAACCCCAAAGAGATTTTACTACACCTCTATCACAGTGACTGAAATAAAGGTAAGAATGTACAGCTAGCCACTCTAGAAAATAGTTTGTCAGTTAAAAAAAAAAAACTAAACATGCAACTACCATACAACTTAGCAACTGTACTCCTGTGCATTTATCCCAGAGAAATAAAAACTTACATACATTTACACAAGAACCTGTACGCAAGTATAGCAGCTTTTTCCATGATGACCAAAAACTAGGAACAATTCAGATATCCTTTACCTTGTGAATAAGTAAGCAAGTTATCATACATTCATACCATGGAATATTACTCACCAATAAAAATAATAAACTATTGATATATACAATAACATAGATGAATCTTTAGCGAATTGTGCTCAGTAAAACCAAAAGCTTACATATTATTCCATTTATATAACATTCTTGAAATTACAGTTATAGAAATGGAGAACAGAATAGCTGTTACCTGAGGTTAATGAAGGATTTGGGGTGGGAGATAAGTAGGTGTGGCTATAAAAGGGCAACATGAGGGATCCTTGTGGTGATGGAAGTATTCTTTATCTTGACTATAGCAATACCAATATTCTGGTTGTGATATTATACTACAGTTTGGCAAGATGTTACCATTGGGGGAAACTGGGTAAAGGGTACACAGTATCTCTCAGTATTATTTTTTTATAACTGCATGTGAATCTATAATTATCTTAAAATCAGTTTAATTTTAAAAGTAATTCATTTATCTTTTTGAATATGTAATAGATGCCCATGGCACAAAATTTAGAAGTCTATATTTATGTTTACATAGTGATTAGGAATCATGATATACAGATACATGCTTTATGTTAAATATGACTTTTCTTCTCCTTTCTCCTCTTCTTCTTTGAAAATAG
Seq C2 exon
AGGGAGTTCGTAATATTTCTAATCAACTTTCCATAACAACCAAGATTGCCCGGGAACACCCAGACATGAGAAACTATGCTAAGCGGAAAGGTTGGTGGGATGGTAAAAAGGAGTTTGATTTTGCTGCAGCATATTCCTATCTTGACACAGCCAAGATGATGACTTCATCAGGCAGATACTGTGAGGGCTACAAGCTTCTAAATAAGCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144306-SCRN3:NM_001193528:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(24.9=100)
A:
NA
C2:
PF0357710=Peptidase_C69=PD(13.2=73.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)