MmuINT1030787 @ mm10
Intron Retention
Gene
ENSMUSG00000008226 | Scrn3
Description
secernin 3 [Source:MGI Symbol;Acc:MGI:1921866]
Coordinates
chr2:73319303-73322194:+
Coord C1 exon
chr2:73319303-73319499
Coord A exon
chr2:73319500-73321984
Coord C2 exon
chr2:73321985-73322194
Length
2485 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
3' ss Seq
TTTCTGCCCTTTACCAATAGGCG
3' ss Score
9.9
Exon sequences
Seq C1 exon
GCTGGGCCTTGAGAGAGCTGACACGGCTGAGAAAGCTCTGGATGTCATTGTTGACTTACTAGAAAAGTATGGCCAAGGTGGAAACTGCGCAGAGGGCAAAGAGTTCAGCTATTACAACAGTTTCCTGATAGCTGACAGGAATGAAGCCTGGATCCTGGAGACGTCGGGGAAGTACTGGGCAGCAGAGAGAGTCCAAG
Seq A exon
GTGTGAACAGCTACCTGCAGTTTGGTTCATAATTATGTAATTGATAAAACCGACTGTAACTTTGGGTGATACATTGGCTTGCCTTTAGAGATTTATAATCCATTGCAGAGCAAGGCTTAAATTGGAAAGAACAGAAGGGAACGAGAACTGTGATGAGCTTTCGTACAAAAATACCAGGAGCATTATCTCCAGTGGCCTGTGGCTGCTGATAGTGTGGTGGTGGTGGTGGTCGTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTGATTGCAGTTTGATTGCTTTGGAATTGATTTCTCCAGGTGATTTGTTTGTGGCCATACATTCCTCTAATTTCTTCTTGTGTGTGTTTCTTTGTGACACGTATGCATGTATATATGTGGAGGGAGGCATATTAGACCGCTGTGTTCAAGTGAAGGTCAGAGGACAACCCACGGTGACTCGTGGTCCCTGTGGTTTACTGCTCCTGTGTGAACTTGACTGTGACCCCCACACTTCTGGGGATTTTCTCCCATCGCCTTCCGTCTCACCACAGAAGTCCAGGGACTGTAGACACCACCGTCATCCCTGACCTTATCTACGTCCTGGGGGTTCGAATTCGCATCATCCATTAAGCTTTCTCCAAAGCCAGTCCTCTTAATTTCAGGTGAAGAAATCCAGAGATAGAAAGTAACTTAGTGTGCTGAGTGCAAGTCTTCATCCCCTTTCCTTACTCTGGAGAGCACAGCCTGGTGTGGAAACATAATCTCACGCTTCTTGTGAACCGACATCTTGAATCTCCTAGTTTTACAAAGGAGATAAGGGATGTCTGTAAACATCCTAGCGGAGGTTAGCCCAGTTGCTGTTGCTTATCTGGCACACACAAGTCCTGGTTGAATCCCCAGCAGTGTGTAAAATGGAGACGGGTGGGACACAGCTGTAATCCCGCCATCTGGGAGGGAGAGAGGTAGGGAGAGCGGAAGTTGGAGATCAGTGTCGACTGCACAGAGTCTGAGTCTAGCCTTGGACTCAGGAGAACCTGCCTCGACTAAGTAGTTAATGAACTGGGTGAACGATGAATGATGTGGACCCAGGGGCACTGTGAACATCAGAGGAAGGAAAACCATTGTGAGCTTCTGGGGGCAAAAGGACGTCACGGGAGCCTGTGCTGGAAGATTTCACCGTTACCTTTCAAAATAGGGCACTGCCAGTTATTTCCATCGGCTTTAGAAATGCTGTTGTTATATTCTAAGTTTGACACTTTCTATGTATTAATAAAATATATAAAATTAAATTTAATCCATTTTATTATTACACTGATTACTTTGGTTGTATCAATGACCACTTTTTCTTTTATTAAACATGCTACCCGAAAGGCAAAGGCATACAAATATCATTGAAAAACATCTTACCTGATCATGCAAAACAAATGCCTTTCTGGGTGTGATCATCCTGTTGAAATAACCTTGCTAGTGCTTCCTTGTTCCATAAAGAACTAGATTGTTGCTTTGAGTATCTCCAACACAGAAATCATACATCTATGATAGATTGCTAATCACCTGCATCTGGCCATTGAGTATTATATACATGTACTGAAATGCTAAACAAAGTGGCATGCATCATACAAGATACAAATGAACTGTTGATAATACAATGGGTCTTCCTAGAATTGGCTGACTTAGAAAGGCCAGAAGGCAGGACAGCAAGATAGCTCAGCAGGTAAGGGTGCTTGCTGTCAGTCCCAACAACCCGAGTGATTCCCAGAACACAGTGGTGAAATGTGACCTCAGCACATGTACACACAAGAAAACAAATGTACATTTAAACATTTTAAAATAATTTTTTAAAAGACAGAAGGCTATTTACTATATAATTCTACACATATAACATTCTTTTAAAAAATGCATATGTAGGCATATGTGCTATGGCATGTGTGTGAAGGTCAGAGGGCAACGTGGAGAATCAGCTTTCTTTTTCTATCGTGTGAGCTCTGGGGATTAAACTCAGATGGGTCAGCTTGTGGCATGTACCTTTACCCAATATATATAAATTCACACACACATGCTGTGTGTGAGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTATGCATGCTCATGCAAGCATGGTTTTAGATACCAAATATACCTAGAGCTAATGAGTCATTAGGATTGGGAGATGCACTGCTCTGGTATGAAAGGGAAAGATGATGGATGGTCCAAGTATTCTTTTCCTTGACACTCTCACTACCAATGTTCTTGATGTGATAATATTCTATATTTTTAAAAATGTGATGGGTAGAAACAGTGAAGTATAATTTCATATTACTGCATCTGAGTGTACAGTTACCTCAAAGTTTAATTTTAAATTTTATTAATTGTTTAGGACATGCAGTAGATGTCCATGGCCAGTCTTATGTTGAAGTATGATTGAGAATCATAATGTAGAGATAGATACTTTATGTTAAAGGTAGTTTTTCTTCGCCTTTCTGCCCTTTACCAATAG
Seq C2 exon
GCGTTCGTAATATTTCCAATCAGCTTTCCATAACAACCAAGATTGACCGGGAACATCCAGACATGAGGAACTACGCTAAGCAGAGGGGCTGGTGGGATGGCAAAGAAGAATTTGATTTTACTGCGGCCTATTCTTACATTGACACGGCTGCTATGATGACTTCACCAAGCAGGTACTGCCAGGGCTACAAGCTTCTGGATAAACACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008226:ENSMUST00000090811:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PD(41.3=92.2)
A:
NA
C2:
PF0357710=Peptidase_C69=PD(29.1=95.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types