GgaINT1024589 @ galGal4
Intron Retention
Gene
ENSGALG00000011945 | SCRN2
Description
secernin 2 [Source:HGNC Symbol;Acc:HGNC:30381]
Coordinates
chr27:3894943-3895464:+
Coord C1 exon
chr27:3894943-3895142
Coord A exon
chr27:3895143-3895248
Coord C2 exon
chr27:3895249-3895464
Length
106 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ACGTGTCCTGAGCTCCACAGAGG
3' ss Score
1.56
Exon sequences
Seq C1 exon
GCTGGGCTTGGAGAGGGGCGGCTCTGCCAGGGAAGCGCTGGAGGTGATCACGGCGCTGCTGGAGCAGCACGGGCAGGGTGGGAGCTGCAAGGAGGAGCCGATACCCTTTGTGTACCACAACACCTTCCTGCTGGCTGACCGCCACGAGGCCTGGGTGCTGGAGACGGCCGGCCGCTACTGGGCAGCCCAACGGATCCAAG
Seq A exon
GTGAGGTGGGAGACCCTGCGAGCACATGCAGCTTCAGGTGGGGTTAATGGGGGGAGCCCCATCCGCCGGGGTCTGCCCCACGCCTGACGTGTCCTGAGCTCCACAG
Seq C2 exon
AGGGCAGCCGCAACATCTCCAACCAGCTCAGCATCGGGACGGACATCACAGCTGAGCACCCAGGGCTGCGGCAGCGAGCCCAGAGCCAGGGCTGGTGGAGCGGGGTCGGCCAGTTCAGCTTTGCTGAGGTTTTCTCCCTGGCACAGCAGCCGCCACGCATGGAGGCTGCCAAGAGCCGCTATCGTGCTGGCAAGGAGCTGCTGCAGCAGCACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011945:ENSGALT00000019483:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.178
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(31.2=100)
A:
NA
C2:
PF0357710=Peptidase_C69=FE(33.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCCGATACCCTTTGTGT
R:
GTGCCAGGGAGAAAACCTCAG
Band lengths:
252-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]