HsaINT0146143 @ hg38
Intron Retention
Gene
ENSG00000141295 | SCRN2
Description
secernin 2 [Source:HGNC Symbol;Acc:HGNC:30381]
Coordinates
chr17:47838791-47839643:-
Coord C1 exon
chr17:47839444-47839643
Coord A exon
chr17:47839007-47839443
Coord C2 exon
chr17:47838791-47839006
Length
437 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CTCCCCGATCTCCTCCACAGAGG
3' ss Score
9.47
Exon sequences
Seq C1 exon
GCTGGCTTTGGAACGGAGCAGCTCTGCCCAGGAGGCCTTGCATGTGATCACAGGGTTACTGGAGCACTATGGGCAGGGGGGCAACTGCCTGGAGGATGCTGCGCCATTCTCCTACCATAGCACCTTCCTGCTGGCTGACCGCACTGAGGCGTGGGTGCTGGAGACAGCTGGGAGGCTCTGGGCTGCACAGAGGATCCAGG
Seq A exon
GTGAGGTGTTCCCTTTCTCCCAGCTTTGGGAAGTGGGAGAGATGGTAGGGGCAGGGAGGGGCCCGATCCAGGTGCAAGCCTGTCAGGACATCCAGGGAGATGGGAGATGAGCCCACTTGGGAATTCTCCTCCCCTTCACTTGGTTAAGTCTTCCGTGTGCTACAGCCTGTTGCTTCCTCTGGGAAGCCTTCCTGGACTTCCCTGGGTGGTCAGGTTTCCTGCTTATATGCAAGCAGGTACTTCTTTTTCATCGCATTCAACACAGTTGCATGCTTACATTTATCTCTGTGATTATTTTGTCTGCCTCCCCCACCAAAACGTAGGCTCCATGAGGGTAGGTAGTTCTCTTCTCCACCATGTTCTCAGCACCTCGCCCAGTGCCTGGCATAGAATAGATGCTCAATGGTAAATGAACCACTCCCCGATCTCCTCCACAG
Seq C2 exon
AGGGGGCCCGCAACATCTCCAACCAGCTGAGCATTGGCACGGACATCTCGGCCCAACACCCGGAGCTGCGGACTCATGCCCAGGCCAAGGGCTGGTGGGATGGGCAGGGTGCCTTTGACTTTGCTCAGATCTTCTCCCTGACCCAGCAGCCTGTGCGCATGGAGGCTGCCAAGGCCCGCTTCCAGGCAGGGCGGGAGCTGCTGCGGCAACGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141295:ENST00000290216:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.090
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(28.4=100)
A:
NA
C2:
PF0357710=Peptidase_C69=PD(30.1=97.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGGAACGGAGCAGCTCTG
R:
GCTGGGTCAGGGAGAAGATCT
Band lengths:
342-779
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development