MmuALTD0012561-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000020964 | Sel1l
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:MGI Symbol;Acc:MGI:1329016]
Coordinates
chr12:91831569-91833222:-
Coord C1 exon
chr12:91833205-91833222
Coord A exon
chr12:91833055-91833204
Coord C2 exon
chr12:91831569-91831674
Length
150 bp
Sequences
Splice sites
5' ss Seq
AAAGTGCGT
5' ss Score
5.93
3' ss Seq
ATGTGTCATTTAATTGTCAGCTG
3' ss Score
4.97
Exon sequences
Seq C1 exon
TCTTGACTGCCATTGAAG
Seq A exon
GTACGGCGCACGGGGAGCCCTGCCACTTCCCTTTCCTTTTCCTGGATAAGGAGTATGATGAGTGCACCTCAGACGGGAGGGAAGATGGCAGACTGTGGTGTGCCACAACCTATGACTACAAGACAGATGAGAAGTGGGGCTTCTGCGAAA
Seq C2 exon
CTGAAGAAGATGCTGCCAAAAGACGACAGATGCAGGAAGCAGAGATGATCTATCAGGCCGGGATGAAGATACTGAATGGAAGCAATAGGAAGAGCCAAAAGAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020964-8-7,9-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types