RnoALTD0026943-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000004464 | Sel1l
Description
SEL1L ERAD E3 ligase adaptor subunit [Source:RGD Symbol;Acc:620147]
Coordinates
chr6:115598325-115600040:-
Coord C1 exon
chr6:115600023-115600040
Coord A exon
chr6:115599873-115600022
Coord C2 exon
chr6:115598325-115598430
Length
150 bp
Sequences
Splice sites
5' ss Seq
AAAGTGCGT
5' ss Score
5.93
3' ss Seq
ATGTGTCATTTCATTGTCAGCCG
3' ss Score
4.68
Exon sequences
Seq C1 exon
TTTTGACTGCCATTGAAG
Seq A exon
GTACGGCGCACGGGGAGCCCTGCCACTTCCCTTTCCTTTTCCTGGATAAGGAATATGATGAGTGCACATCAGACGGGAGGGAAGATGGCAGACTGTGGTGTGCCACAACCTATGACTACAAGACAGATGAGAAGTGGGGCTTCTGCGAAA
Seq C2 exon
CCGAAGAAGATGCTGCCAAAAGGCGACAGATGCAGGAAGCAGAAGCCATCTATCAGAGCGGGATGAAGATCCTGAACGGCAGCACCAGGAAGAACCAAAAGAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004464-10-9,11-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.296
Domain overlap (PFAM):
C1:
PF0004014=fn2=WD(100=73.7)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]