Special

MmuALTD0012951-2/2 @ mm10

Alternative 5'ss

Gene
ENSMUSG00000046329 | Slc25a23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:MGI Symbol;Acc:MGI:1914222]
Coordinates
chr17:57052682-57053342:-
Coord C1 exon
chr17:57053241-57053342
Coord A exon
chr17:57053202-57053240
Coord C2 exon
chr17:57052682-57052849
Length
39 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
TTAACAGAGTTCTCACCCAGGTA
3' ss Score
0.29
Exon sequences
Seq C1 exon
CGGGCCATCCGGGGGCAACAGGAGACACTGCACGTTCAGGAGCGCTTCGTGGCTGGTTCCCTGGCCGGGGCCACAGCTCAAACCATCATATACCCCATGGAG
Seq A exon
GTGAGAAGGAGGGGCTGGAGGAAGATCCAGCATGGGAGG
Seq C2 exon
GTACTAAAGACTCGGCTGACTCTACGCAGAACTGGCCAATACAAGGGGCTCCTGGATTGTGCAAAGCGGATCTTAGAACGTGAAGGGCCCCGCGCCTTCTACCGTGGCTACCTGCCTAATGTGCTGGGCATCATCCCCTATGCAGGAATCGACCTAGCTGTCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046329-11-15,12-15-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0015322=Mito_carr=PD(11.8=24.3),PF0015322=Mito_carr=PU(28.9=70.3)

							
A:
NA

							
C2:
PF0015322=Mito_carr=PU(81.0=97.9)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000040198





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000128348, ENSMUSP00000132169
  



Associated events







Other assemblies


mm9




Conservation


Human
(hg38)
chr19:6453941-6453942 
Human
(hg19)
chr19:6453952-6453953 
Rat
(rn6)
chr9:9994575-9994722 
LOW PSI
RnoALTD0027815-2/2
(Slc25a23)
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
chr17:4798692-4798693 
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GAGACACTGCACGTTCAGGAG

				
R: 
CAGTTCTGCGTAGAGTCAGCC

				
Band lengths: 
115-154

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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