RnoALTD0027815-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000047781 | Slc25a23
Description
solute carrier family 25 member 23 [Source:RGD Symbol;Acc:1588586]
Coordinates
chr9:9994575-9995290:+
Coord C1 exon
chr9:9994575-9994682
Coord A exon
chr9:9994683-9994722
Coord C2 exon
chr9:9995123-9995290
Length
40 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
TTAACAGAGTTCTCACCTAGGTA
3' ss Score
0.78
Exon sequences
Seq C1 exon
ATCAAGCGGGCCATCTGCGGGCAGCAAGAGACACTGCACGTTCAGGAGCGCTTCGTGGCTGGCTCCCTGGCCGGGGCCACAGCTCAAACCATCATATACCCCATGGAG
Seq A exon
GTGAGAAGGAGGGGGCTCGAGAAAGATCCAGAATGGGAAG
Seq C2 exon
GTACTAAAGACTCGGCTGACTCTACGCAGAACTGGCCAGTACAAGGGGCTCCTGGACTGTGCAAGGCGAATCTTAGAGCGTGAAGGGCCACGCGCCTTCTACCGTGGCTACCTGCCTAATGTGCTGGGCATCATTCCCTATGCAGGAATCGACCTAGCTGTCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047781-8-17,9-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(8.6=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
A:
NA
C2:
PF0015322=Mito_carr=FE(59.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGAGACACTGCACGTTC
R:
CCTTGTACTGGCCAGTTCTGC
Band lengths:
132-172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]