MmuALTD0013176-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000048304 | Slitrk3
Description
SLIT and NTRK-like family, member 3 [Source:MGI Symbol;Acc:MGI:2679447]
Coordinates
chr3:72852048-72861570:-
Coord C1 exon
chr3:72861470-72861570
Coord A exon
NA
Coord C2 exon
chr3:72852048-72855377
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
CATCTTTATTTCTATTGCAGTTT
3' ss Score
8.84
Exon sequences
Seq C1 exon
TGGGGGCGGCTGGTGGCTTTGCATTCGGGTTCCAGCCCTGCGTTTTCTGTATTGCCTTCTAGTCCCTGACCTGGCGCTCCCAGTTTAGAGGCAGACGTTCG
Seq A exon
NA
Seq C2 exon
TTTTGTAATCAACCAGGAATGATGAAGCCAAGCATAGCTGAAATGCTTCACAGAGGAAGAATGCTGTGGATAATTCTTCTAAGCACAATTGCTCTAGGATGGACTACCCCAATTCCCCTGATAGAGGACTCAGAAGAAATAGATGAGCCCTGTTTTGATCCATGCTACTGCGAAGTTAAAGAAAGCCTCTTTCACATACATTGTGACAGCAAGGGATTTACAAACATTAGTCAGATTACTGAGTTCTGGTCAAGACCTTTTAAACTGTATCTTCAGAGGAATTCGATGAGAAGACTATACACAAACAGTTTTCTTCACTTGAATAATGCGGTGTCCATTAACCTTGGGAACAATGCATTGCAGGACATTCAAACTGGAGCATTTAATGGCCTTAAGATTTTAAAGAGACTGTATCTCCATGAGAACAAACTAGATGTCTTCAGAAATGACACCTTCCTTGGCTTAGAAAGTCTGGAATATCTTCAGGCAGATTACAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048304-0-1,1-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138551=LRR_8=WD(100=5.8),PF138551=LRR_8=WD(100=6.1),PF0146213=LRRNT=WD(100=2.8),PF138551=LRR_8=WD(100=6.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCCTGCGTTTTCTGTAT
R:
TGTAAATCCCTTGCTGTCACA
Band lengths:
292-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: