MmuEX0043699 @ mm9
Exon Skipping
Gene
ENSMUSG00000048304 | Slitrk3
Description
SLIT and NTRK-like family, member 3 [Source:MGI Symbol;Acc:MGI:2679447]
Coordinates
chr3:72852048-72860865:-
Coord C1 exon
chr3:72860465-72860865
Coord A exon
chr3:72857123-72857293
Coord C2 exon
chr3:72852048-72855377
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTTTTTAATTTATTTTTTAGGGC
3' ss Score
11.24
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
CGGGCTCTCGGGAACCGGGGCGCTTGCCACTGAAGGAAGAGCATCAAGATCTTTGATCAGGCCATCCAGGTCCTGGGACACTTGCACAGCCTGCCTGCCATCCGGAGCAAGCACAGAGAGCAGTGGTCCTGAGCCCACGGTCGCCAGCTTCACCGCGCTAGGTGCGCGCTCGGCTCTCCCATCGCTATGCAGCGACCATTTCCCTCTAAGTCTAAAGGTGGACCACTCTGAAAGGATTACAAGCGTGATTTGGTAGCCTTTCTGAAAGTTGGTGGCTGGAAGAGGGGAAGATACTGGGCGACAGAATGACGGATACAATGCAGCCTCGCGGAGAGTTTGCCCCTCCCGCTGAGAAGCCCCTTGGAGCGAACCTCGGAGATCCTGAGCGCTCTGCACCATAG
Seq A exon
GGCCTTCCCCCCTCTCCTCCAGCCCCCCTAGCTTCAGCAAGAGGAGACTGGACAAGAGAGGATCCTTAAACTCAAGCTTTGTTTTCCTTGCTGCTTGTCTTTTCATTCTTTTCCATAGTCCGTGGCGAGAAACAAAAATAAAAACCAAAATCCAAACCTCCTGCAAAATAG
Seq C2 exon
TTTTGTAATCAACCAGGAATGATGAAGCCAAGCATAGCTGAAATGCTTCACAGAGGAAGAATGCTGTGGATAATTCTTCTAAGCACAATTGCTCTAGGATGGACTACCCCAATTCCCCTGATAGAGGACTCAGAAGAAATAGATGAGCCCTGTTTTGATCCATGCTACTGCGAAGTTAAAGAAAGCCTCTTTCACATACATTGTGACAGCAAGGGATTTACAAACATTAGTCAGATTACTGAGTTCTGGTCAAGACCTTTTAAACTGTATCTTCAGAGGAATTCGATGAGAAGACTATACACAAACAGTTTTCTTCACTTGAATAATGCGGTGTCCATTAACCTTGGGAACAATGCATTGCAGGACATTCAAACTGGAGCATTTAATGGCCTTAAGATTTTAAAGAGACTGTATCTCCATGAGAACAAACTAGATGTCTTCAGAAATGACACCTTCCTTGGCTTAGAAAGTCTGGAATATCTTCAGGCAGATTACAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048304-'2-1,'2-0,3-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138551=LRR_8=WD(100=5.8),PF138551=LRR_8=WD(100=6.1),PF0146213=LRRNT=WD(100=2.8),PF138551=LRR_8=WD(100=6.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGGGAAGATACTGGGCG
R:
TCAGGGGAATTGGGGTAGTCC
Band lengths:
243-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: