MmuALTD0013650-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48448332-48448773:+
Coord C1 exon
chr6:48448332-48448392
Coord A exon
NA
Coord C2 exon
chr6:48448643-48448773
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGAGTACGG
5' ss Score
1.01
3' ss Seq
TGCTACTCTCTCACCTCCAGAGG
3' ss Score
9.27
Exon sequences
Seq C1 exon
GGTGAAGTGATCATGCAGGAGCCAGGGAGCTGTTGCCCCATTTGTCAGCAAGACACTCTGA
Seq A exon
NA
Seq C2 exon
AGGAGGAGCCAGTCTCCTGCAGGTACCTCACAGAACTCAGAAACCTCACCAAGGGTCCCTGCCACCTGGATCAGATAGAAGTGAGCTACTGCAGTGGACACTGCAGGTCCAGCACCAATGTCATGACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-104-105,105-105-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(25.0=66.7)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCCCATTTGTCAGCAAGA
R:
TATCTGATCCAGGTGGCAGGG
Band lengths:
106-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: