MmuALTD0013650-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48498333-48498774:+
Coord C1 exon
chr6:48498333-48498393
Coord A exon
chr6:48498394-48498402
Coord C2 exon
chr6:48498644-48498774
Length
9 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGG
5' ss Score
5.76
3' ss Seq
TGCTACTCTCTCACCTCCAGAGG
3' ss Score
9.27
Exon sequences
Seq C1 exon
GGTGAAGTGATCATGCAGGAGCCAGGGAGCTGTTGCCCCATTTGTCAGCAAGACACTCTGA
Seq A exon
GTACGGAGG
Seq C2 exon
AGGAGGAGCCAGTCTCCTGCAGGTACCTCACAGAACTCAGAAACCTCACCAAGGGTCCCTGCCACCTGGATCAGATAGAAGTGAGCTACTGCAGTGGACACTGCAGGTCCAGCACCAATGTCATGACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-115-123,116-123-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(25.0=66.7)
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCCCATTTGTCAGCAAGA
R:
TATCTGATCCAGGTGGCAGGG
Band lengths:
106-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types