MmuALTD0013805-1/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000004626 | Stxbp2
Description
syntaxin binding protein 2 [Source:MGI Symbol;Acc:MGI:107370]
Coordinates
chr8:3631104-3632269:+
Coord C1 exon
chr8:3631104-3631204
Coord A exon
NA
Coord C2 exon
chr8:3632220-3632269
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
CCCTTCTTTCTTCCCTGTAGAAA
3' ss Score
12.01
Exon sequences
Seq C1 exon
GACGCGTAGAGCCACGCCCCCACCTTGGGACCGACCCGGAAGCAGCGCTATTCCTCAGGGGAAGATGGCGCCCTTGGGGCTGAAGGCGGTGGTAGGGGAAA
Seq A exon
NA
Seq C2 exon
AAATTTTAAGCGGCGTCATCCGGAGCGTTAAGAAGGATGGCGAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004626-0-0,1-0,2-0,4-0-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0099518=Sec1=PU(0.2=5.6)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGAGCCACGCCCCCAC
R:
CTTCCACTCGCCATCCTTCTT
Band lengths:
146-220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types