MmuALTD0013805-2/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000004626 | Stxbp2
Description
syntaxin binding protein 2 [Source:MGI Symbol;Acc:MGI:107370]
Coordinates
chr8:3631104-3632269:+
Coord C1 exon
chr8:3631104-3631204
Coord A exon
chr8:3631205-3631278
Coord C2 exon
chr8:3632220-3632269
Length
74 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CCCTTCTTTCTTCCCTGTAGAAA
3' ss Score
12.01
Exon sequences
Seq C1 exon
GACGCGTAGAGCCACGCCCCCACCTTGGGACCGACCCGGAAGCAGCGCTATTCCTCAGGGGAAGATGGCGCCCTTGGGGCTGAAGGCGGTGGTAGGGGAAA
Seq A exon
GTGAGTGTCACCCCGCGGCGGGGCTCTGGTGTTTTCTTGGCTGTCCCTTGGGGGATCTGGGGACCTCGGGAGAG
Seq C2 exon
AAATTTTAAGCGGCGTCATCCGGAGCGTTAAGAAGGATGGCGAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004626-0-0,1-0,2-0,4-0-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0099518=Sec1=PU(0.2=5.6)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGAGCCACGCCCCCAC
R:
CTTCCACTCGCCATCCTTCTT
Band lengths:
146-220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types