MmuALTD0014221-1/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000038482 | Tfdp1
Description
transcription factor Dp 1 [Source:MGI Symbol;Acc:MGI:101934]
Coordinates
chr8:13338821-13339739:+
Coord C1 exon
chr8:13338821-13338920
Coord A exon
NA
Coord C2 exon
chr8:13339665-13339739
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
TTTTTTTTTTTTTTAACCAGATA
3' ss Score
9.57
Exon sequences
Seq C1 exon
CGGCGCCGCTGGCTCAGGGCAGGGACCGCCAGGGCCGGACCTCCGGGCCGGCGCCTCCGCGCCCCCGTCGTCCGCCCCGCGCGCCCCGCCGGCCAGCCAG
Seq A exon
NA
Seq C2 exon
ATAAGTACGGTTTCTTCTGTGGAGGGTACGCAGTTAAAGCCTTGATTTCCTGGATCTGGTAACATGGCAAAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038482-2-4,3-4,4-4,5-4-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.393
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF059717=Methyltransf_10=PU(2.6=50.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types