MmuALTD0014221-4/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000038482 | Tfdp1
Description
transcription factor Dp 1 [Source:MGI Symbol;Acc:MGI:101934]
Coordinates
chr8:13338821-13339739:+
Coord C1 exon
chr8:13338821-13338920
Coord A exon
chr8:13338921-13339146
Coord C2 exon
chr8:13339665-13339739
Length
226 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
TTTTTTTTTTTTTTAACCAGATA
3' ss Score
9.57
Exon sequences
Seq C1 exon
CGGCGCCGCTGGCTCAGGGCAGGGACCGCCAGGGCCGGACCTCCGGGCCGGCGCCTCCGCGCCCCCGTCGTCCGCCCCGCGCGCCCCGCCGGCCAGCCAG
Seq A exon
GTGTGGCGGGGGCACCGGCCGGTCGCGGCGGGAGGGCGCAGGCTGGGCGCGCGGCCCCGTTCCCGCCCCAGCCCGGTTCCCGCGTCCGGTCGCATCCCGCCCGCCGCCCAGCCTCAGCTGGAGTCGGCCTCGACGCGGCGTGGCGTGGGCGGCGGGCAGGGGTCCTGGCCACCCTCCGGCTCTGTCCGCGCCAGGGCGCGGGGCTGGTGGCTGGGCCTAGTGACAG
Seq C2 exon
ATAAGTACGGTTTCTTCTGTGGAGGGTACGCAGTTAAAGCCTTGATTTCCTGGATCTGGTAACATGGCAAAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038482-2-4,3-4,4-4,5-4-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.393
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF059717=Methyltransf_10=PU(2.6=50.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types