MmuALTD0014710-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000029817 | Tra2a
Description
transformer 2 alpha homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:1933972]
Coordinates
chr6:49194867-49195606:-
Coord C1 exon
chr6:49195481-49195606
Coord A exon
chr6:49195475-49195480
Coord C2 exon
chr6:49194867-49194934
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TCAGCTCTCATTTCTTACAGAAG
3' ss Score
7.78
Exon sequences
Seq C1 exon
CGGTGGTGGAGGTGGCGGAGGAGGAGGTGGCGGAGGAGGAGGTGGTGGCGGTGGTAGACGACGAGATTCTTACTACGATAGAGGATATGATCGAGGCTATGACAGATACGAAGATTATGATTACCG
Seq A exon
GTACAG
Seq C2 exon
AAGAAGGTCGCCCTCTCCTTACTACAGTCGCTACAGGTCACGATCGAGATCCCGTTCCTATAGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029817-12-11,13-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.687 A=NA C2=0.917
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(21.1=37.5)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGGTAGACGACGAGATTC
R:
ACTGTAGTAAGGAGAGGGCGAC
Band lengths:
106-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: