MmuALTD0014710-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000029817 | Tra2a
Description
transformer 2 alpha homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:1933972]
Coordinates
chr6:49244868-49245610:-
Coord C1 exon
chr6:49245482-49245610
Coord A exon
chr6:49245476-49245481
Coord C2 exon
chr6:49244868-49244935
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TCAGCTCTCATTTCTTACAGAAG
3' ss Score
7.78
Exon sequences
Seq C1 exon
CAGCGGTGGTGGAGGTGGCGGAGGAGGAGGTGGCGGAGGAGGAGGTGGTGGCGGTGGTAGACGACGAGATTCTTACTACGATAGAGGATATGATCGAGGCTATGACAGATACGAAGATTATGATTACCG
Seq A exon
GTACAG
Seq C2 exon
AAGAAGGTCGCCCTCTCCTTACTACAGTCGCTACAGGTCACGATCGAGATCCCGTTCCTATAGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029817-18-12,19-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.757 A=NA C2=0.931
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGGTAGACGACGAGATTC
R:
ACTGTAGTAAGGAGAGGGCGAC
Band lengths:
106-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types