MmuALTA0018735-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000029817 | Tra2a
Description
transformer 2 alpha homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:1933972]
Coordinates
chr6:49244868-49245610:-
Coord C1 exon
chr6:49245476-49245610
Coord A exon
chr6:49244933-49244935
Coord C2 exon
chr6:49244868-49244932
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TCAGCTCTCATTTCTTACAGAAG
3' ss Score
7.78
Exon sequences
Seq C1 exon
CAGCGGTGGTGGAGGTGGCGGAGGAGGAGGTGGCGGAGGAGGAGGTGGTGGCGGTGGTAGACGACGAGATTCTTACTACGATAGAGGATATGATCGAGGCTATGACAGATACGAAGATTATGATTACCGGTACAG
Seq A exon
AAG
Seq C2 exon
AAGGTCGCCCTCTCCTTACTACAGTCGCTACAGGTCACGATCGAGATCCCGTTCCTATAGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029817-19-13,19-12,19-11-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.734 A=NA C2=0.931
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGGTAGACGACGAGATTC
R:
CTGTAGTAAGGAGAGGGCGAC
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types