HsaALTA0008925-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000164548 | TRA2A
Description
transformer 2 alpha homolog (Drosophila) [Source:HGNC Symbol;Acc:16645]
Coordinates
chr7:23545365-23545885:-
Coord C1 exon
chr7:23545757-23545885
Coord A exon
chr7:23545430-23545432
Coord C2 exon
chr7:23545365-23545429
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TAATCTTTCATTTCTTACAGAAG
3' ss Score
8.63
Exon sequences
Seq C1 exon
TAGTGGTGGGGGTGGTGGAGGAGGCGGCGGCGGTGGAGGTGGAGGTGGTGGCAGACGTCGAGATTCTTACTATGATAGAGGATATGATCGTGGGTATGACAGATATGAAGACTATGATTACCGATACAG
Seq A exon
AAG
Seq C2 exon
ACGATCACCTTCTCCTTATTATAGTCGATATAGATCACGATCAAGATCTCGTTCCTACAGCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164548-14-13,14-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.705 A=NA C2=0.917
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGGGTATGACAGATATGAAGAC
R:
TGGGCTGTAGGAACGAGATCT
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)