GgaALTA1033305-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000010973 | TRA2A
Description
transformer-2 protein homolog alpha [Source:RefSeq peptide;Acc:NP_001006360]
Coordinates
chr2:31414778-31415639:-
Coord C1 exon
chr2:31415532-31415639
Coord A exon
chr2:31414805-31414807
Coord C2 exon
chr2:31414778-31414804
Length
3 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
3' ss Seq
TGTTTTAATTTCCTTTAAAGGAG
3' ss Score
8.26
Exon sequences
Seq C1 exon
CAGTGGAGGAGGTGGTGGTGGTGGAGCAGGTCGGCGCCGCGACTCTTACTATGATAGGGGGTATGACAGAGGATATGACAGATACGAAGAATACGACTACAGATATAG
Seq A exon
GAG
Seq C2 exon
ACGATCCCCATCGCCTTACTATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010973-34-29,34-28-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCGCGACTCTTACTATGAT
R:
TAGTAAGGCGATGGGGATCGT
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]