MmuALTA0018735-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000029817 | Tra2a
Description
transformer 2 alpha homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:1933972]
Coordinates
chr6:49194867-49195609:-
Coord C1 exon
chr6:49195475-49195609
Coord A exon
chr6:49194932-49194934
Coord C2 exon
chr6:49194867-49194931
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TCAGCTCTCATTTCTTACAGAAG
3' ss Score
7.78
Exon sequences
Seq C1 exon
CAGCGGTGGTGGAGGTGGCGGAGGAGGAGGTGGCGGAGGAGGAGGTGGTGGCGGTGGTAGACGACGAGATTCTTACTACGATAGAGGATATGATCGAGGCTATGACAGATACGAAGATTATGATTACCGGTACAG
Seq A exon
AAG
Seq C2 exon
AAGGTCGCCCTCTCCTTACTACAGTCGCTACAGGTCACGATCGAGATCCCGTTCCTATAGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029817-13-12,13-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.705 A=NA C2=0.917
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(21.1=37.5)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGGTAGACGACGAGATTC
R:
CTGTAGTAAGGAGAGGGCGAC
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: