DreALTA0030526-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000007863 | tra2a
Description
transformer 2 alpha homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-1391]
Coordinates
chr19:20602978-20605803:+
Coord C1 exon
chr19:20602978-20603100
Coord A exon
chr19:20605765-20605767
Coord C2 exon
chr19:20605768-20605803
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TCTGTTGTTTTGTTTTCCAGCAG
3' ss Score
9.42
Exon sequences
Seq C1 exon
TAATGGAGGTGGTGGTGGAGGCGGCGGCAGCAGCAGCGGTGGCCGGAGACGAGACTCGTATTATGATCGTGGCTATGATCGCGGCTATGATCGTGGATATGACGAGTATGACTACAGATACAG
Seq A exon
CAG
Seq C2 exon
GAGGCGCTCTCCGTCCCCCTATTACAGCCGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007863-17-12,17-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=NA C2=0.960
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGTGGCTATGATCGCGG
R:
TAGCGGCTGTAATAGGGGGAC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]