Special

MmuALTD0014713-2/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000022858 | Tra2b
Description
transformer 2 beta homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:106016]
Coordinates
chr16:22255057-22259334:-
Coord C1 exon
chr16:22259059-22259334
Coord A exon
chr16:22258938-22259058
Coord C2 exon
chr16:22255057-22255190
Length
121 bp
Sequences
Splice sites
5' ss Seq
TAGGTAATA
5' ss Score
6.84
3' ss Seq
CTTTTGACATCTGCGTGTAGGAA
3' ss Score
6.89
Exon sequences
Seq C1 exon
GTTAATGTTGAAGAAGGAAAATGCGGAAGTCGTCATTTGACAAGTTTTATAAATGAGTATTTGAAGCTCAGGAATAAGTGAAGCTGAAATTTGAAAAAATAAAAGAAAGAATGCATGCTAATTATCAGACCAGAAGTCCCACTTGTAGAATATTGAGCAATTTGTGTGAAGTGGGGAAGATGAAAGAAGTCAGAATTTGAAACGGAAGAATGAAGAAAAGAAATAAAAATGAAGTTAAGATAAGAAGTAATCTGGAATCAGAAAGCACTACGCTAA
Seq A exon
GTAATTACTAGTCTGTTTATGTGTCCCTGTATATTTTGCTAAACATGCATGCATTATTTGTTTAATAGAAGAAGTATATACAGGGTAAAGAAGTGACTTCCAAGGGAATCGTTTAAATTAG
Seq C2 exon
GAATCCCGTTCTGCTTCCCGAAGTGGAAGTGCTCACGGATCGGGGAAATCTGCACGGCATACACCTGCAAGGTCTCGCTCCAAGGAAGACTCAAGGCGTTCTAGATCAAAGTCCAGGTCCAGGTCTGAATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022858-4-4,5-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
3' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.192 A=NA C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000123782





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr3:185649242-185649242 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr1:81885396-81885396 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr9:5430334-5430334 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGCAATTTGTGTGAAGTGGGGA

				
R: 
AGACCTGGACCTGGACTTTGA

				
Band lengths: 
247-368

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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