MmuALTD0014713-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000022858 | Tra2b
Description
transformer 2 beta homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:106016]
Coordinates
chr16:22254984-22259261:-
Coord C1 exon
chr16:22258986-22259261
Coord A exon
chr16:22258865-22258985
Coord C2 exon
chr16:22254984-22255117
Length
121 bp
Sequences
Splice sites
5' ss Seq
TAGGTAATA
5' ss Score
6.84
3' ss Seq
CTTTTGACATCTGCGTGTAGGAA
3' ss Score
6.89
Exon sequences
Seq C1 exon
GTTAATGTTGAAGAAGGAAAATGCGGAAGTCGTCATTTGACAAGTTTTATAAATGAGTATTTGAAGCTCAGGAATAAGTGAAGCTGAAATTTGAAAAAATAAAAGAAAGAATGCATGCTAATTATCAGACCAGAAGTCCCACTTGTAGAATATTGAGCAATTTGTGTGAAGTGGGGAAGATGAAAGAAGTCAGAATTTGAAACGGAAGAATGAAGAAAAGAAATAAAAATGAAGTTAAGATAAGAAGTAATCTGGAATCAGAAAGCACTACGCTAA
Seq A exon
GTAATTACTAGTCTGTTTATGTGTCCCTGTATATTTTGCTAAACATGCATGCATTATTTGTTTAATAGAAGAAGTATATACAGGGTAAAGAAGTGACTTCCAAGGGAATCGTTTAAATTAG
Seq C2 exon
GAATCCCGTTCTGCTTCCCGAAGTGGAAGTGCTCACGGATCGGGGAAATCTGCACGGCATACACCTGCAAGGTCTCGCTCCAAGGAAGACTCAAGGCGTTCTAGATCAAAGTCCAGGTCCAGGTCTGAATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022858-8-8,9-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAATTTGTGTGAAGTGGGGA
R:
AGACCTGGACCTGGACTTTGA
Band lengths:
247-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types